PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003441-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YC
Protein Properties Length: 260aa    MW: 28821.6 Da    PI: 5.8188
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003441-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.41.4e-55821851101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  WALNUT_00003441-RA  82 QLQNFWATQyqeIEQASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 172
                         89*****999899****************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  WALNUT_00003441-RA 173 FDFLVDIVPREDL 185
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.37E-3372176IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.3E-3895168IPR009072Histone-fold
PfamPF008081.6E-21104167IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDQLGHGQPP AIGVVGSAAQ VSYALNPYES NQMIGASQPG SVGSMQSPSQ TAGLSASSAQ  60
LAQNQLAYQH IHHQQQQQLQ QQLQNFWATQ YQEIEQASDF KNHSLPLARI KKIMKADEDV  120
RMISAEAPVI FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV  180
PREDLKDEVL ASIPRGNAAV GGDGLPCYYV PPQHAQPVGA PGMIMGKPVM DQALYGQQMR  240
PYMTQTMWPH LQQEQPPSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B2e-4097182994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C2e-4097182994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034636.11e-134Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007034637.11e-134Nuclear transcription factor Y subunit C-9 isoform 1
SwissprotQ8L4B21e-83NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A061EMF21e-134A0A061EMF2_THECC; Nuclear transcription factor Y subunit C-9 isoform 1
STRINGPOPTR_0010s03730.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-80nuclear factor Y, subunit C3