PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003260-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 366aa    MW: 41015.7 Da    PI: 5.6543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003260-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00083426123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C++ Fs+   L  H+r+H
  WALNUT_00003260-RA  4 HKCKLCSRGFSNGRALGGHMRSH 26
                        79********************9 PP

2zf-C2H212.80.00036238260123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k+F++   L  H  +H
  WALNUT_00003260-RA 238 YKCETCKKTFRSYQALGGHRASH 260
                         9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-5330No hitNo description
PROSITE profilePS5015710.783431IPR007087Zinc finger, C2H2
PfamPF139128.8E-7427IPR007087Zinc finger, C2H2
SMARTSM003550.025426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346238265IPR007087Zinc finger, C2H2
PfamPF139123.5E-11238262IPR007087Zinc finger, C2H2
SMARTSM003550.023238260IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.72E-8238260No hitNo description
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-8287314No hitNo description
PROSITE profilePS501579.307292319IPR007087Zinc finger, C2H2
PfamPF139121.7E-10292314IPR007087Zinc finger, C2H2
SMARTSM003550.22292314IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280294314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEKHKCKLCS RGFSNGRALG GHMRSHMLNL PIPVKREETP LPPVLPPPPP PHDQLSETES  60
ASSPSSSSEE EGGGGGDDDE KGLYYGLREN PKRSIRLVDP EFSLAVDAGS VVLQDRESET  120
ESSKNPTRRR SKRTRNLEIK FHLHDQQRVQ EQVEPMKKLN FNKAESWAEP EPVSSISDTT  180
TEEDVAFCLM MLSRDKWKKQ EQDDEEEDRE DEAERYLDDS EESEDQLKLS KTRTRGKYKC  240
ETCKKTFRSY QALGGHRASH KKIKVNPAPV YEPELEQVNV GTSSSMPEKK IHECPVCFRV  300
FASGQALGGH KRTHVTGSAQ PPASVRSSIK LGQALIDLNL PAPMDDDDIS QIELSAVSDA  360
EFVNPH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1938831e-61KJ193883.1 Corylus avellana microsatellite BR245 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018853929.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A2I4HCQ20.0A0A2I4HCQ2_JUGRE; zinc finger protein ZAT9-like
STRINGcassava4.1_031439m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-51C2H2-like zinc finger protein