PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002582-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 273aa    MW: 30810.6 Da    PI: 8.0385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002582-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-183282155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +++ GVr+++ +g+WvAeI+d       +  r +lg+f taeeAa+a+++a+  l+g
  WALNUT_00002582-RA 32 KKFVGVRQRP-SGKWVAEIKDtT-----HkIRMWLGTFETAEEAARAYDEAACLLRG 82
                        589*******.7*********33.....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.63E-323292No hitNo description
SuperFamilySSF541711.77E-193391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-283391IPR001471AP2/ERF domain
PROSITE profilePS5103219.773390IPR001471AP2/ERF domain
PfamPF008471.1E-123382IPR001471AP2/ERF domain
SMARTSM003803.0E-363396IPR001471AP2/ERF domain
PRINTSPR003674.6E-83445IPR001471AP2/ERF domain
PRINTSPR003674.6E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEHHLLQNQQ HKGVSANKQS NYKQRTTNYC RKKFVGVRQR PSGKWVAEIK DTTHKIRMWL  60
GTFETAEEAA RAYDEAACLL RGANTRTNFA THVSPDSPLS LKIKNLLHQK KTMKHHPSAA  120
TTFKPSSRTS SNSCLTDFRT HDSSNRRSTC NAPFSGKEQD ALMVGDAYRP DLSSCITGLE  180
SDPFHSDHPW PFQTGCDQLP LIQERLEYPK HGGLLPADTT GLELTEFEQM KLERQISSSL  240
YAMNGVNEYM GNAYDAGDPL WDLSNLCHMF CPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-143293163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-143294467ATERF1
3gcc_A2e-143294467ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582636.12e-97PREDICTED: ethylene-responsive transcription factor RAP2-11
SwissprotQ6J9S17e-61RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLB9T1F01e-95B9T1F0_RICCO; DNA binding protein, putative
STRINGPOPTR_0001s04190.17e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-50related to AP2 11