PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001583-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 253aa    MW: 27597.7 Da    PI: 6.5304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001583-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18113163255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp++    +r++lg++ t+e+A  a+++a+ +++g
  WALNUT_00001583-RA 113 HYRGVRRRP-WGKYAAEIRDPRKK--GTRVWLGTYETPEDAGLAYDRAAFEMRG 163
                         6********.**********9653..3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-22113172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-32113172IPR001471AP2/ERF domain
SMARTSM003802.6E-38113177IPR001471AP2/ERF domain
CDDcd000188.14E-28113173No hitNo description
PROSITE profilePS5103223.433113171IPR001471AP2/ERF domain
PfamPF008471.4E-13113163IPR001471AP2/ERF domain
PRINTSPR003672.5E-13114125IPR001471AP2/ERF domain
PRINTSPR003672.5E-13153173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MESDLAVLES IRQYLLGDSE TTGISFYAAM GLDYDANKVD VSRSTAFTGV FLDQSNWDGA  60
FPSKVEDAGN AAFSGAVNFG WVSSDEVDLA KEATVKSEQP ETREVAVAAA SVHYRGVRRR  120
PWGKYAAEIR DPRKKGTRVW LGTYETPEDA GLAYDRAAFE MRGSKAKLNF PHLLGSNEAQ  180
PIRVTHKRRS PAPSSPSSDR GSPQPKRRKS SGGSAAAIEI SCEPKDTWCS LVDGSVALWP  240
VDHLKSDISN TFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-29109178170ATERF1
3gcc_A1e-29109178170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186208KRRSPAPSSPSSDRGSPQPKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052302.14e-58Ethylene-responsive element binding factor 13, putative
SwissprotQ8L9K12e-45ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A061DUI15e-58A0A061DUI1_THECC; Ethylene-responsive element binding factor 13, putative
STRINGPOPTR_0003s07910.13e-46(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-43ethylene-responsive element binding factor 13