PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001369-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 301aa    MW: 32472.8 Da    PI: 7.6155
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001369-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.4e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
  WALNUT_00001369-RA   4 SCNGCRVLRKGCSENCSIRPCLmwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e++l ++
  WALNUT_00001369-RA  95 LCQSAVEAVLKGA 107
                         ******9998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381559.1E-941297IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.8323109IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLMWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQSAV EAVLKGAPIT AITSEAAASD  120
HGPPLKAYDI RHVSKDENSA ASNDPHRVKT RCRFKRSVIK PRASKVGLGA ADDSSLDVKP  180
KWDGGCCTQE LNRSTSHESS LSHQSELAAN VEGESKETES MISVETAETS VLFLSEPESG  240
PKANEQGQDS EIGLELTLGF EPAWRANHVV PVKKRKVEAC AGGSSTGFGT CKMELGLDYP  300
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816783.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-108LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2I4EBL00.0A0A2I4EBL0_JUGRE; LOB domain-containing protein 41-like
STRINGEMJ169441e-164(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-102LOB domain-containing protein 41