PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000551-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 558aa    MW: 61709.2 Da    PI: 6.6779
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000551-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.2e-35169277289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg 88 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ +++ +    ++ +++ +++ +  +
  WALNUT_00000551-RA 169 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWNPTTSvtttTSRQEQYNQQ-P--Q 256
                         79**************************************************************5554433333323333333333.2..1 PP

                 TCP  89 ....................k 89 
                                             +
  WALNUT_00000551-RA 257 iidenentigihrgpmdtiaS 277
                         223444455565444444430 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-31169259IPR005333Transcription factor, TCP
PROSITE profilePS5136934.295171229IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEGFGFWCWV METGKTEWQS LLGEAAAELE GEKHKGPSLD PQKNHHHEHQ NPVLNSRHVQ  60
EEGEEEEDDQ DSTSQQKEHH HHQQQEAVFH FQHHHLHQNQ HLYGGLDSQP QPSQPPKKRS  120
HFPSPQTCIE YAGKMGENHH QATTSSRLGI RSGGGEIVEV QGGHIVRSTG RKDRHSKVCT  180
AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK KAKAAIDELA ELPAWNPTTS  240
VTTTTSRQEQ YNQQPQIIDE NENTIGIHRG PMDTIASSSR RTTSAMVGCD GGRVSEADMH  300
NLQSVQMGQN PNNSCSFLPP SLDSDSIAET IKSFFPTGAS AETMHSPSPI QYQNYPPDLQ  360
SRTSSQSQDL RLSLQSFHDP VDLLHRNQHQ AQTYHHQNEQ MQFFSGTTPL GYGGSSSAGW  420
SEHHQHHPAD TGRFQRMIAW NSAGADTGNA NSGGGSGFVF NSPPPPPLFG QNQFSTQRGP  480
LQSSNNTSSV RVWIDPSIAT ASAYHHQIPP TIHQSSTSSI GFASGGFSGF HIPARIQGEE  540
EHDGISNKPS SASSDSRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120KKRSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137216.20.0PREDICTED: transcription factor TCP4, partial
SwissprotQ8LPR51e-102TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0A0KXN11e-170A0A0A0KXN1_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s38480.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-72TCP family protein