PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000224-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 199aa    MW: 22936.8 Da    PI: 4.8047
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000224-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.5e-3281281128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         lppGfrF Ptdeelv ++L +k++  +++  ++i+++d++ ++Pwd+   k+ ++ +  yfFsk          +nr tk+gyW     d+
  WALNUT_00000224-RA   8 LPPGFRFCPTDEELVLHFLYHKASLLPFHP-NIIPDLDLCLHDPWDFInGKTLSSGSTFYFFSKVT--------ENRFTKKGYWMDLDIDE 89 
                         79*************************999.89**************7445556677889998864........5899************* PP

                 NAM  91 evlskkgelvglkktLvfykgrap.kgektdWvmheyrl 128
                         +vl++ g++vg+kk Lvfy g+ap +g +t W+m+ey+l
  WALNUT_00000224-RA  90 PVLTSAGKKVGIKKHLVFYIGQAPgQGYETAWIMQEYHL 128
                         *******************997764799*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-385156IPR003441NAC domain
PROSITE profilePS5100537.6738158IPR003441NAC domain
PfamPF023651.0E-209128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGDDSVNLPP GFRFCPTDEE LVLHFLYHKA SLLPFHPNII PDLDLCLHDP WDFINGKTLS  60
SGSTFYFFSK VTENRFTKKG YWMDLDIDEP VLTSAGKKVG IKKHLVFYIG QAPGQGYETA  120
WIMQEYHLCN YGVSGAFYNR RVKRKDRTKW VLCRVHERTG NFAECFCCSD DEDNGTELSS  180
LDEMYLSTID DDLDEINFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-29516117171NAC domain-containing protein 19
3swm_B1e-29516117171NAC domain-containing protein 19
3swm_C1e-29516117171NAC domain-containing protein 19
3swm_D1e-29516117171NAC domain-containing protein 19
3swp_A1e-29516117171NAC domain-containing protein 19
3swp_B1e-29516117171NAC domain-containing protein 19
3swp_C1e-29516117171NAC domain-containing protein 19
3swp_D1e-29516117171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827519.11e-149PREDICTED: NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK62e-56NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2I4F7991e-148A0A2I4F799_JUGRE; NAC domain-containing protein 104-like isoform X1
STRINGVIT_04s0044g01500.t011e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-59xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]