PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000090-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 233aa    MW: 26150.3 Da    PI: 8.9495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000090-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.8e-055880123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  WALNUT_00000090-RA 58 YTCNFCKREFKSAQALGGHMNVH 80
                        9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-65584No hitNo description
PfamPF139123.2E-65881IPR007087Zinc finger, C2H2
SMARTSM003550.00395880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1575885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MERKSLTNSL KDHSIDTRAI KYCINDNKYV MPKDSANCDS QSYGDDYVNG LSWPPRSYTC  60
NFCKREFKSA QALGGHMNVH RRDRARLRQS PPRDGQYPFL NLNCNPNPKF SPSSSSSLSS  120
PSTRLTPFAF PLPSFISPTL SPLTSPSSAS PNEVQKWGLV SSLFDSLSPK SMDLTKLKSE  180
KSFNGGEEFD HGFKERGGHK IFKKQEIARL DLEVDFLRDS TGDIDLELRL GNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135380229superman protein
2l1o_A3e-135380229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841716.11e-172PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_018841722.11e-172PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2I4GCT71e-170A0A2I4GCT7_JUGRE; transcriptional regulator SUPERMAN-like
STRINGVIT_05s0049g00070.t014e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.18e-24C2H2 family protein