PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000071-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 141aa    MW: 15380.9 Da    PI: 6.2723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000071-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-202171255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+ +++g
  WALNUT_00000071-RA 21 KYRGVRRRP-WGKFAAEIRDSTR---HgARVWLGTFNTAEEAARAYDRAAYAMRG 71
                        8********.**********422...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-312181IPR001471AP2/ERF domain
CDDcd000181.57E-192180No hitNo description
PfamPF008472.4E-152171IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-232180IPR016177DNA-binding domain
PROSITE profilePS5103223.7492179IPR001471AP2/ERF domain
SMARTSM003803.9E-352185IPR001471AP2/ERF domain
PRINTSPR003679.4E-122233IPR001471AP2/ERF domain
PRINTSPR003679.4E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MDEDTHGGMS AMVDKEGGKV KYRGVRRRPW GKFAAEIRDS TRHGARVWLG TFNTAEEAAR  60
AYDRAAYAMR GSLAILNFPN EYPLASGGSS APSSSSAASS SSGRGNMGER GRSEHGQQVF  120
EFECLDDKVL EDLLDSEEKK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-372114114126Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841674.11e-93PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC51e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2I4GCN22e-92A0A2I4GCN2_JUGRE; ethylene-responsive transcription factor ERF095-like
STRINGXP_010039174.11e-53(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]