PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000026-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 284aa    MW: 31078.8 Da    PI: 6.9044
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000026-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.5e-341872155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  WALNUT_00000026-RA 18 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851575IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-321773IPR009057Homeodomain-like
SuperFamilySSF466896.63E-181772IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-251873IPR006447Myb domain, plants
PfamPF002491.1E-92071IPR001005SANT/Myb domain
PfamPF143792.2E-8112136IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPITGGNSH NNASLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI  60
YHVKSHLQKY RLAKYLPDSS SDGRLTDFFC SMFIYYINDG NYVLIDQCIG QVQRQLQLRI  120
EAQGKYLKKI IEEQQRLGGV VSETSGSGVP GPASGDNCPD SDNKTDPATP APTSEGPLQD  180
KAAKERAPAS LSIDESFSSH HEPLTPDSGC HLSSPAESPK GERLIKKQRV LVGGAYAKPE  240
MVLPHQILES SCTSYQQQHS IYLSEPSSGI SIRNEDHMEK LGAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647087.11e-141PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_010647086.11e-141PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_010647085.11e-141PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_002272588.21e-141PREDICTED: protein PHR1-LIKE 1-like isoform X1
TrEMBLA5C9661e-142A5C966_VITVI; Putative uncharacterized protein
STRINGVIT_00s0475g00040.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-97G2-like family protein