PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S26061.10
Common NameJCGZ_11077, LOC105637222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 409aa    MW: 44760.2 Da    PI: 5.8925
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S26061.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017137158223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  Cg++F + ++L  H+r H
  Jcr4S26061.10 137 TCCLCGEVFDSYHSLFGHMRFH 158
                    6*******************99 PP

2zf-C2H211.80.00072324346123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C +C k++++   L  H r+H
  Jcr4S26061.10 324 FQCDICEKTYPTGQALGGHKRSH 346
                    89******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-55983IPR007087Zinc finger, C2H2
SMARTSM003557.65981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
PROSITE profilePS501578.746136163IPR007087Zinc finger, C2H2
SMARTSM003551.6136158IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.8E-8137158No hitNo description
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
PfamPF139120.0027138159IPR007087Zinc finger, C2H2
SuperFamilySSF576679.8E-8319346No hitNo description
PfamPF139121.4E-12324348IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39324346IPR007087Zinc finger, C2H2
SMARTSM003550.076324346IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280326346IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDNSSNHNPP MEDSSSKNKL CIKIKMPTTA AATTEAQGDG GSGGGDDFQQ LKPGQLGYRV  60
CEFCGKKFDN GKAWGGHKRH HLKILKNNSK RNQEVKTNIQ KHKNDGGVVE DGGSKIVGRC  120
NVIKAGDVRM SSDGKPTCCL CGEVFDSYHS LFGHMRFHPD RDWKGINRPS SSSGIDQIYS  180
ASVSTAKENS DNSIDLLSSL SGWSRRDKRG RSCLSDLIPQ AAQSLLTLAR DITTQESAGH  240
QQEGSGSATK SFRRVLESDK KLGFDSNQNY GLLVNHKNKK MKLENEEVDG NDGVVADEIP  300
ESEAEEEEED DDDDQVRSPM ENIFQCDICE KTYPTGQALG GHKRSHWKAP AKGLPNEDAN  360
HSSASNFAFN TPSSCGKPEG IQATHGMLNI DLNKPYVMQE DGEESFSDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076027.10.0zinc finger protein ZAT9
TrEMBLA0A067KEH30.0A0A067KEH3_JATCU; Uncharacterized protein
STRINGcassava4.1_022792m1e-77(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.17e-17C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]