PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S14744.10
Common NameJCGZ_13556, LOC105638652
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 333aa    MW: 37243.8 Da    PI: 9.0767
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S14744.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix591.2e-1818110286
       trihelix   2 WtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt +e+++Liea+r ++er   r++        ++ +W++v ++++++g+ rs++qC++kw+nl ++ykki++ e++ +++   + + + +le
  Jcr4S14744.10  18 WTVSETMVLIEAKRMDDERRMkRSSdsegrgkPAELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKIRDYERRIAEKGDGNEASYWKLE 110
                    *************966666552321333333399******************************************99776666666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9571082IPR017877Myb-like domain
PfamPF138379.2E-131793No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADQGGHSVI RDYRKGNWTV SETMVLIEAK RMDDERRMKR SSDSEGRGKP AELRWKWVED  60
YCWRKGCLRS QNQCNDKWDN LMRDYKKIRD YERRIAEKGD GNEASYWKLE KNERKEKNLP  120
SNMLLDVYEA LVKVVERRGA QRMVTTTIGG GGGGGSASSN QNVSYMVERP ISSVHHPSLP  180
PLMQHQDSPS VPMPVLPLPP QPPPPPPMIY SQPSPAVDSD TSHEHSDSPA KRRRRKIGGE  240
GSGGTGTAGE STSSDEVGSA IAKSASIIAE AIEACEERKE RRHRDLLSLH ERRLKIEESN  300
TEINRQGINA LVDAINNLAN SILALASHNK TPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235KRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077873.10.0methyl-CpG-binding protein 2
TrEMBLA0A067KAD80.0A0A067KAD8_JATCU; Uncharacterized protein
STRINGXP_002515806.11e-164(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-52Trihelix family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]