PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10008.20
Common NameJCGZ_16578
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 280aa    MW: 30224.9 Da    PI: 8.0094
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10008.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015112134123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+++F++   L  H  +H
  Jcr4S10008.20 112 YECKTCNRCFPSFQALGGHRASH 134
                    99**********99999998887 PP

2zf-C2H213.90.00016186208123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg  Fs+   L  H+r+H
  Jcr4S10008.20 186 HECSICGAEFSSGQALGGHMRRH 208
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.68E-9111134No hitNo description
PfamPF139121.9E-11111136IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743112139IPR007087Zinc finger, C2H2
SMARTSM003550.14112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576679.68E-9181208No hitNo description
Gene3DG3DSA:3.30.160.608.2E-4184208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.7E-13185210IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743186208IPR007087Zinc finger, C2H2
SMARTSM003550.01186208IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVIEAQELAM GSTEIITKGK RTKRQRAVSP LRLAVTSSSS SSGGAAPNEI IESNTSLSSS  60
TPATSIEFSG GRGGGEEEED MANCLILLAQ GTQKNLPKLP ASSYSSPKAC VYECKTCNRC  120
FPSFQALGGH RASHKKPNTS KNSNEEKKVF LEEDDDQVAL SLQIVPNRSL FASSNSNINV  180
KSNKVHECSI CGAEFSSGQA LGGHMRRHRA AFASNTNSNS MKMSMSLGTE LQEAKKPRNS  240
LQLDLNLPAP EDDIRESKFH FASKEQVLVF SSSSLVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082467.10.0zinc finger protein ZAT5
TrEMBLA0A067KBJ70.0A0A067KBJ7_JATCU; Uncharacterized protein
STRINGXP_006493540.12e-94(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-50C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]