PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09760.20
Common NameJCGZ_23582, LOC105647872
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 213aa    MW: 22527.8 Da    PI: 4.7687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09760.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-202170255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++  +g+WvAeIr+p   + r  r++lg+f t +eAa+a+++a++kl+g
  Jcr4S09760.20 21 TYRGVRQRT-WGKWVAEIREP---N-RgNRIWLGTFNTSDEAARAYDQAALKLYG 70
                   69****999.**********8...2.359***********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.36E-302078No hitNo description
SMARTSM003802.3E-342184IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-222179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-312179IPR001471AP2/ERF domain
PfamPF008477.4E-152170IPR001471AP2/ERF domain
PROSITE profilePS5103223.0642178IPR001471AP2/ERF domain
PRINTSPR003678.4E-112233IPR001471AP2/ERF domain
PRINTSPR003678.4E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRRSRKGCMK GKGGPENALC TYRGVRQRTW GKWVAEIREP NRGNRIWLGT FNTSDEAARA  60
YDQAALKLYG SSATLNLPQY CFNLPIGTAS NSNISAGTCQ NVIGSSNNEE ISSSCASMCQ  120
DLIGSCSSEV ITGGARNSNT CAIGCESCSS SSCLIGGLGD NDFYWPQDEL DIENHFMDNT  180
FFGGAGIGGG TGIGGDGFSW DGSGNTWGGA WGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-192278360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A7e-1921791473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089486.11e-154dehydration-responsive element-binding protein 2D
TrEMBLA0A067JW561e-153A0A067JW56_JATCU; Uncharacterized protein
STRINGcassava4.1_029523m1e-57(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.17e-41ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]