PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07308.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YA
Protein Properties Length: 380aa    MW: 41041.7 Da    PI: 8.4714
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07308.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA82.37.7e-26191267158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk...................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep++VNaKQ+++Il+RRq+Rak+e ekk                     +    pylheSRh+hA+rR+Rg+gGrF
  Jcr4S07308.10 191 EEPVFVNAKQFHGILRRRQARAKAELEKKaikvrklslceikptvtgaWGKLLALPYLHESRHQHAMRRARGCGGRF 267
                    69******************************************99994456788*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-28189270IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.499190270IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26192267IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860195215IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPAKSENENH RLEQTTQTVL QSAIYSQPWW RGVGNSLNFG ETASKSSSAK NLNGSQPDGA  60
IQSQANSGLD NGANTNKDVQ ISVASQPVAV STTCIVEYEA MQRAPKHRYG SNGLEHHLKQ  120
VASSTPASMD THLEPNSQME LVGHSIVLTS YPYSDPQYGG MLASYAPQVV VPSQLYGMHH  180
ARIPLPLEME EEPVFVNAKQ FHGILRRRQA RAKAELEKKA IKVRKLSLCE IKPTVTGAWG  240
KLLALPYLHE SRHQHAMRRA RGCGGRFLSN KKSESSSSNP ASDEDGSSGA NPSRQPVLFS  300
GSEWLPKNGT GDLDSSSCQQ EGKGSTAQEM QACVSSNGNA HGLSSMYHPP SSDGLTGGFL  360
VLQRETTHRN GVSNGVLPIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-16191275266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532892.10.0nuclear transcription factor Y subunit A-1
RefseqXP_020532893.10.0nuclear transcription factor Y subunit A-1
RefseqXP_020532894.10.0nuclear transcription factor Y subunit A-1
RefseqXP_020532895.10.0nuclear transcription factor Y subunit A-1
RefseqXP_020532896.10.0nuclear transcription factor Y subunit A-1
TrEMBLA0A067LH090.0A0A067LH09_JATCU; Uncharacterized protein
STRINGcassava4.1_011264m1e-163(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.34e-41nuclear factor Y, subunit A1