PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07213.30
Common NameICE1, LOC105648729
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 542aa    MW: 59062.2 Da    PI: 5.8569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07213.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11358400754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Jcr4S07213.30 358 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 400
                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16354420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9357400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-16358413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-12358404No hitNo description
CDDcd048736.85E-6471531No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MLSGLNGAVW IDDKEPQDST TNTININDSS CSIIQSKQEM GSLSTFKSML DVEDDWYVAN  60
TSIQNHQDGI RDITFSPNLG DPDNLLLHSV DSSSSCSPTS SVFNNLDPSQ VHYFMHPKPT  120
LSSLLNVVSN NPLEHGFDLG DIGFLDNQAT NTTTTTANAS SLLNRGGGVL GNFTDMSSNN  180
QISSSNLCTD PSFSTTRMLQ LPETCPGFAG FRGFDESSGN ALFLNRSKLL RPLETFPSMG  240
AQPTLFQKRA ALRKNLADNG SNLGALSGIE INKGKREMSQ MGEENERKRK LGNVDDTFED  300
VSIDGSGLNY DSDEFTENTK MEEIGKNGGN SSNANSSVTG GGGDQKGKKK GLPAKNLMAE  360
RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIEYLKEL LQRINDLHNE LESTPPGSSL  420
TPTTSFHPLT PTPSALPSRI KDKLCPTSLP SPNGQPARVE VRVREGRAVN IHMFCSRRAG  480
LLLSTMRALD NLGLDIQQAV ISCFNGFAMD IFRAEQCKEG QDVHPEQIKA VLLDSAGFHG  540
VM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347365KKKGLPAKNLMAERRRRKK
2359366ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2496920.0KP249692.1 Jatropha curcas inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306859.10.0transcription factor ICE1-like
SwissprotQ9LSE21e-140ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0F6T6U70.0A0A0F6T6U7_JATCU; Inducer of CBF expression 1
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-122bHLH family protein
Publications ? help Back to Top
  1. Wang H,Zou Z,Wang S,Gong M
    Global analysis of transcriptome responses and gene expression profiles to cold stress of Jatropha curcas L.
    PLoS ONE, 2013. 8(12): p. e82817
    [PMID:24349370]