PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06207.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 563aa    MW: 60255 Da    PI: 6.9173
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06207.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11195251155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Jcr4S06207.10 195 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 251
                    57*******************5444.2455536655.779999**************98 PP

2AP236.11.6e-11283328755
            AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Jcr4S06207.10 283 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 328
                    899*********988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-9195251IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-15195261IPR016177DNA-binding domain
CDDcd000189.95E-20195261No hitNo description
PROSITE profilePS5103217.477196259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-12196260IPR001471AP2/ERF domain
SMARTSM003805.4E-23196265IPR001471AP2/ERF domain
PRINTSPR003672.5E-6197208IPR001471AP2/ERF domain
PROSITE profilePS5103216.502275336IPR001471AP2/ERF domain
CDDcd000187.42E-21283338No hitNo description
PfamPF008471.3E-6283328IPR001471AP2/ERF domain
SMARTSM003802.4E-26283342IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-15284338IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-15284337IPR001471AP2/ERF domain
PRINTSPR003672.5E-6318338IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MNMDSSSHHQ NWLGFSLSNQ HHQHINPSHL CLFEAFTTTT TTSSADRGRA QSQARGEDVT  60
ATGTDLSIFT PTGPKLEDFL GSSTTAPPPP PPQPSLQSQF LAETAAAAAA AAPPPPSMTT  120
DSETCEIYDS ELKSIAACFL RGFSNSSSSS SSTTTTTTTN INQEINIITQ NQPLLAQAAE  180
SAPRKTVDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEEKAAR  240
AYDLAALKYW GPTTTTNFPI SNYQKEIEEM KHMTRQEFVA SLRRHHQHGR WQARIGRVAG  300
NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIANSNL PIGGISGKSK  360
NSSDSTSESK SMDGCKSSAD DRDHLSSASS VTFVSPTANS PLGFTMPVKQ DPSDFWSNIL  420
GCRNTSITTS VSNNTKNETG NNVTFHSFSN PLSQVQPSID VDFNVGSSVN CGNNNGILLN  480
GGGGYYGGVG LSGGGGGGGS GGSNVSSTSS NLIPFAAPVA LNSSSSNYEG SSNYGGWIAQ  540
SIHSLQSAKP NVSIFQTPIF GME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074046.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-138AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2C9UMZ00.0A0A2C9UMZ0_MANES; Uncharacterized protein
STRINGcassava4.1_004734m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-118AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]