PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05952.20
Common NameJCGZ_26269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 335aa    MW: 37665 Da    PI: 8.5401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05952.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011205227123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k+F++   L  H  +H
  Jcr4S05952.20 205 YKCQTCKKRFRSYQALGGHKASH 227
                    9***********99998888877 PP

2zf-C2H212.70.00038258280123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kCp C+k+F +   L  H ++H
  Jcr4S05952.20 258 FKCPFCDKVFDSGQALGGHKKVH 280
                    89**********99999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702532IPR007087Zinc finger, C2H2
PfamPF139125.1E-7629IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SMARTSM003550.047205227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554205232IPR007087Zinc finger, C2H2
PfamPF139122.3E-11205229IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-7205280No hitNo description
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
SMARTSM003550.0071258280IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-9258280IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118258280IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEKNRICRIC NRRFANGKAM GGHMRSHLAK LPLPPKPISS QLYPSPKSPS PSSSSSFNYP  60
LTDQNPMQSY RSVNHELPFM SKANLANDGE SETESSPRNN NPTRRRSKRR RKSAEKVAES  120
VLKSAESPEQ VSSISSDFFN EEDVAMCLLM LSRDKRTIVK QVAYDHSYTI QEYRDEIEDE  180
DETFEDDDES FGLIHVGSNK SQGKYKCQTC KKRFRSYQAL GGHKASHKKM KTHDLYVEGS  240
GSGSRSGAVM AIDQPRIFKC PFCDKVFDSG QALGGHKKVH FSYLGNNCNS NNNSDTKISV  300
KFTDDLLDLN LPAPEDDGEV SQELSTLSKA YHLRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020540821.10.0zinc finger protein ZAT9
TrEMBLA0A067JI040.0A0A067JI04_JATCU; Uncharacterized protein
STRINGcassava4.1_023535m1e-106(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-35C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]