PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05342.40
Common NameICE2, JCGZ_26864, LOC105630202
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 523aa    MW: 57170.1 Da    PI: 5.1878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05342.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11339381754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+r+N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Jcr4S05342.40 339 MAERRRRKRLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 381
                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.853332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16335401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9338381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-14338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.00E-6339385No hitNo description
Gene3DG3DSA:4.10.280.107.3E-15339394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.50E-7452512No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MVLGANGVVW MGGERGGAVE EDEEDVVSSW TRNHSKDNEV ERKEEEDLGI HGSLSTFKSM  60
LETDWYINSD INPSPLQNHH EIRDLAFCSN PTPENLLLQP MDSSSSCSPS QAFSLDPSQS  120
HHPFLPSKSC FSSLLNVTNP FDNGLDLGCE SVFLNQFQQN QGSNLMDFCG PEFHASQLLS  180
VPDNAGAGGF GNVGLEGFDG SPGNALFSSR AKVLRPLEIL SQVGSPPTLF QKRAMLRQSG  240
DKIGNLEMSG LRYGRESGGN WGEMEKKRKK SEESEIEEVS FDVSGLNYDS DEQNGDGKVE  300
ESVKNNGGSN SNANSTVTGG GGGGDQKGKK KGMPAKNLMA ERRRRKRLND RLYMLRSVVP  360
KISKMDRASI LGDAIDYLKE LLQRINDLHN ELESAPSGPL LPQSTSFHPL TPTPATLPCR  420
VKEELCPSSL PSPKNQSARV EVRVREGRAV NIHMFCARRP GLLLSTMRAL DNLGLDIQQA  480
VISCFNGFAL DVFRAEQCRE GQDVLPEQIK AVLLDSAGFH GMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265269KKRKK
2328346KKKGMPAKNLMAERRRRKR
3340347ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2496930.0KP249693.1 Jatropha curcas inducer of CBF expression 2 (ICE2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306848.10.0transcription factor ICE1
SwissprotQ9LSE21e-163ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A067L0720.0A0A067L072_JATCU; Inducer of CBF expression 2
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-138bHLH family protein
Publications ? help Back to Top
  1. Wang H,Zou Z,Wang S,Gong M
    Global analysis of transcriptome responses and gene expression profiles to cold stress of Jatropha curcas L.
    PLoS ONE, 2013. 8(12): p. e82817
    [PMID:24349370]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]