PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05283.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 146aa    MW: 16241.7 Da    PI: 5.311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05283.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-201364256
            AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa+a+++a+ +++g+
  Jcr4S05283.30 13 RYRGVRRRP-WGKFAAEIRD----SmRQgTRIWLGTFNTAEEAARAYDKAAYAMRGH 64
                   6********.**********....33235**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.6041371IPR001471AP2/ERF domain
CDDcd000182.47E-281372No hitNo description
SMARTSM003804.5E-361377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-321373IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-241373IPR016177DNA-binding domain
PfamPF008473.5E-151364IPR001471AP2/ERF domain
PRINTSPR003677.1E-121425IPR001471AP2/ERF domain
PRINTSPR003677.1E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEEKGNEGGS DVRYRGVRRR PWGKFAAEIR DSMRQGTRIW LGTFNTAEEA ARAYDKAAYA  60
MRGHLAILNF PDEHPPKKVH SAASSSYSSS SSSSASSSSS SSSSSSSILQ NVERREIEQG  120
KQVIEFECLD DKLLEDLLDF DDQNKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-3261332114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085330.21e-104ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059D1V24e-52A0A059D1V2_EUCGR; Uncharacterized protein
STRINGXP_010039174.17e-53(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]