PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05022.10
Common NameJCGZ_21825, LOC105649885, WRKY39
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 305aa    MW: 34125.3 Da    PI: 10.3653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05022.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.92.3e-09287305321
                    -SS-EEEEEEE--TT-SS- CS
           WRKY   3 DgynWrKYGqKevkgsefp 21 
                    D y+WrKYGqK++kgs++p
  Jcr4S05022.10 287 DDYSWRKYGQKPIKGSPHP 305
                    99***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.8E-18238283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.6E-9273305IPR003657WRKY domain
PROSITE profilePS5081112.002280305IPR003657WRKY domain
SuperFamilySSF1182909.29E-7283305IPR003657WRKY domain
PfamPF031062.0E-5287305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEEVEEANRA AVESCHRVLS FLSQTQDQVQ YRNLMLETGE AVFRFKRVIS LLNSGLGHAR  60
VRKLKKLPTP LSQNILLDNP HHRTDHSSKN FQLLQSGNDF DNHPIQELGS SSAKSSLCLG  120
GPSLELSSSG KRPSHLAQQT PAAHYHFLQQ HHHLQLQQQQ QQQQQQQMKQ QAEMIFRRSS  180
SGMNLNFDNN TSCTPTMSST RSFISSLSID GSVANMEGSA FHLIGAPRSS DQSSQQHKRK  240
CSGRGEDGSV KCGNSGRCHC SKKRKHRVKR SIKVPAISNK LADIPPDDYS WRKYGQKPIK  300
GSPHP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852910.0KC485291.1 Jatropha curcas WRKY transcription factor (WRKY39) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092091.10.0probable WRKY transcription factor 21
RefseqXP_012092092.10.0probable WRKY transcription factor 21
SwissprotO043361e-93WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLS5CKB40.0S5CKB4_JATCU; WRKY transcription factor 39.1
STRINGXP_002520995.11e-174(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.22e-54WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]