PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04340.10
Common NameJCGZ_16179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 368aa    MW: 40423.1 Da    PI: 6.447
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04340.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088170192123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+++F++   L  H  +H
  Jcr4S04340.10 170 YECKTCNRTFPSFQALGGHRASH 192
                    99**********99999998887 PP

2zf-C2H2130.00032252274123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg  F++   L  H+r+H
  Jcr4S04340.10 252 HECSICGAEFTSGQALGGHMRRH 274
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-13169194IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-6169192No hitNo description
PROSITE profilePS5015710.305170197IPR007087Zinc finger, C2H2
SMARTSM003550.052170192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-6247274No hitNo description
PfamPF139121.3E-12252276IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723252274IPR007087Zinc finger, C2H2
SMARTSM003550.01252274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEAQEEVIEV ATTIKGKRTK RQRVQSPIPF GNLTANSSSG DGDGDGDGDG DRDRDGDIDV  60
DTDGDTNIKN CTNLSPASSE EFQESTQEEE DMANCLILLA QGHNTNNNNN INNITVNNHF  120
KYSSSPKQDY YDNDAGVYSP NSTTTTTKFS SRKFLETGSP GSGKAGYYVY ECKTCNRTFP  180
SFQALGGHRA SHKKPKLNIE EKKQFTLSSD EEEGHLNSSS LSLQLSSNHN HRGVIYSSSS  240
SNNNHHNKNK IHECSICGAE FTSGQALGGH MRRHRAPITA AGSNNKGGGL SLTTRMAMES  300
EQQQVKKARN LISLDLDLNL PAPDEEKLPF ASKQQKQPPQ QQKQQQEEQQ KPKPPLVFSG  360
PALVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020537753.10.0zinc finger protein ZAT5
TrEMBLA0A067KE130.0A0A067KE13_JATCU; Uncharacterized protein
STRINGcassava4.1_027180m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-54C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]