PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04186.20
Common NameJCGZ_00415, LOC105648092
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 353aa    MW: 40170.1 Da    PI: 4.5063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04186.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1763116155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  +g+WvAeIr+p    k    r++lg+f ta eAa+a+++a+k ++g
  Jcr4S04186.20  63 CNYRGVRQRI-WGKWVAEIREPAG--KGprNRHWLGTFETAVEAAQAYDNAAKTMYG 116
                    56*****998.**********844..33459**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.97E-3063125No hitNo description
PfamPF008473.3E-1263116IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1964125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-2864125IPR001471AP2/ERF domain
SMARTSM003808.7E-3364130IPR001471AP2/ERF domain
PROSITE profilePS5103221.91864124IPR001471AP2/ERF domain
PRINTSPR003677.9E-96576IPR001471AP2/ERF domain
PRINTSPR003677.9E-990106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGERKVSSCA EIVSSKNKKI PRKRVEDTLE EWRSEIDEIP KRRPKGSRKG CMRGKGGPEN  60
QSCNYRGVRQ RIWGKWVAEI REPAGKGPRN RHWLGTFETA VEAAQAYDNA AKTMYGSNAV  120
LNFPDYSSEI SSSKLNLLDC SGFDGFEQLR DEKLENCIST TDCRISHGVE QTNAEFAEDG  180
YGSSQGETKI TKAELHMDFD DATTDYMSFN EAEMPIMRKV MEGEISRTES DFMVRHDNVS  240
NDCTDINCYT ETDIKPSTHQ DGNENSVLKP EGNYDYKDFE LGFTNFQQGN CSSNISCEMQ  300
NPSANLPDSL NHTKERNRNF ESNFDPMEPD FNWDSVEEEL GLSIEPWFPE FGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1964124260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020540560.10.0dehydration-responsive element-binding protein 2B
TrEMBLA0A067JJ480.0A0A067JJ48_JATCU; Uncharacterized protein
STRINGcassava4.1_008857m3e-83(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-36ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]