PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04166.10
Common NameJCGZ_10018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 375aa    MW: 43438.7 Da    PI: 9.2742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04166.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68.2e-1215100394
                    EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                    k ++ps  l+++ l++pkkf+ +  g++  s   tl+ ++ r W v++  ++ +++ ++ +GW eF +   +++g f+ F+++g+s+f+  v
  Jcr4S04166.10  15 KLMVPS-ILQQKKLRIPKKFVVKKFGQE-LSGFATLTVPDVRMWLVTV--TQIDQKLWFCNGWHEFIEHYSICVGHFLGFRYEGNSNFS--V 100
                    555555.555556*******99997775.666999*************..**********************************99994..4 PP

2B353.73.8e-17274364498
                    E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    vl ps+  k  ++ lp  fae+h  g     s  ++l+ ++g++W v++ yr+++  + l++GW eF  +n+L egD++vF+l ++++  l+v+vf
  Jcr4S04166.10 274 VLRPSYLYKGYIMHLPSCFAERHlhG----LSGLIKLQLSDGKQWPVRCLYRGGG--TKLSQGWFEFSLENNLGEGDVCVFELLRSRDIVLKVTVF 363
                    6889999999*************643....45589999999********666655..66***********************99999999999999 PP

                    - CS
             B3  98 r 98 
                    r
  Jcr4S04166.10 364 R 364
                    7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-1612103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.37712106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-1812103IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-713109IPR003340B3 DNA binding domain
CDDcd100171.65E-1213103No hitNo description
PfamPF023624.1E-814101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-22267364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-22268364IPR015300DNA-binding pseudobarrel domain
CDDcd100174.75E-20269364No hitNo description
SMARTSM010199.5E-16270366IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197271366IPR003340B3 DNA binding domain
PfamPF023624.4E-15274364IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTDSQVDKCG GQFYKLMVPS ILQQKKLRIP KKFVVKKFGQ ELSGFATLTV PDVRMWLVTV  60
TQIDQKLWFC NGWHEFIEHY SICVGHFLGF RYEGNSNFSV YMFVLMPHKI KDARTVTKPV  120
KDDEKHHVLD EMEAPLLHNA PKHMDWRNVD HKASHRPLGG SFKSQSSDQD SEDVRLQFFV  180
DEENLHSSKN ADLAEKSSKP YESVKKIRKV HRKEQNIDSN DQQPSTHQED EGHMRFGFYR  240
NASARKRSVT AEERERAIIA AKTFELVNPF CRVVLRPSYL YKGYIMHLPS CFAERHLHGL  300
SGLIKLQLSD GKQWPVRCLY RGGGTKLSQG WFEFSLENNL GEGDVCVFEL LRSRDIVLKV  360
TVFRVLESAG RMDRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-6523836716144B3 domain-containing transcription factor VRN1
4i1k_B1e-6523836716144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534318.10.0B3 domain-containing transcription factor VRN1, partial
TrEMBLA0A067LFX30.0A0A067LFX3_JATCU; Uncharacterized protein
STRINGcassava4.1_026568m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-94B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]