PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03023.40
Common NameJCGZ_02315, LOC105632233
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 153aa    MW: 17360 Da    PI: 6.2941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03023.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.7e-212172256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr+++ +g++++eIrdps +g  +r +lg+f+taeeAa+a+++a+ +++g+
  Jcr4S03023.40 21 HYRGVRRRP-WGKYASEIRDPSRQG--ARLWLGTFDTAEEAARAYDRAAFSMRGH 72
                   7********.**********96543..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-152172IPR001471AP2/ERF domain
SMARTSM003804.2E-382185IPR001471AP2/ERF domain
CDDcd000184.08E-292180No hitNo description
PROSITE profilePS5103224.3422179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-332181IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-242180IPR016177DNA-binding domain
PRINTSPR003677.9E-122233IPR001471AP2/ERF domain
PRINTSPR003677.9E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGSSSKGTK NKEDKGREEV HYRGVRRRPW GKYASEIRDP SRQGARLWLG TFDTAEEAAR  60
AYDRAAFSMR GHLAILNFPN EYYSRVIASS SSPHQSSSPS SSFSGAMEMS SERGSSSSSG  120
QEKQVFEFEY LDDTVLEELL ESEEEKKKKR RED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-35161359114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150KKKKRR
2146150KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069942.11e-107ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-50ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A067KW081e-106A0A067KW08_JATCU; Uncharacterized protein
STRINGcassava4.1_020965m2e-58(Manihot esculenta)
STRINGXP_009590142.12e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-31ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]