PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02816.10
Common NameJCGZ_00057, LOC105648335
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 192aa    MW: 21901.6 Da    PI: 4.6463
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02816.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.31.3e-3161251128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrF Pt+eelvv++L++k++  +++  +vi+++d+y ++Pw+L+ k+ ae k+wyf+s+r         +nr+t++gyW+a g d++vl++ 
  Jcr4S02816.10   6 LPPGFRFYPTEEELVVHFLQRKAALLPCHP-DVIPDLDLYPYDPWELDGKALAEGKQWYFYSRRT--------QNRITENGYWNAIGIDEPVLTSA 92 
                    79*************************999.99**************97777889*******984........589******************** PP

            NAM  97 gelvglkktLvfykgrapkge.ktdWvmheyrl 128
                    ++ vg+kk  vfy g+ap g+ k   +m+eyrl
  Jcr4S02816.10  93 NKRVGMKKYSVFYVGEAPVGNeKLIGIMEEYRL 125
                    *****************9986477899****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-403160IPR003441NAC domain
PROSITE profilePS5100539.6726161IPR003441NAC domain
PfamPF023656.9E-187125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSSVNLPPGF RFYPTEEELV VHFLQRKAAL LPCHPDVIPD LDLYPYDPWE LDGKALAEGK  60
QWYFYSRRTQ NRITENGYWN AIGIDEPVLT SANKRVGMKK YSVFYVGEAP VGNEKLIGIM  120
EEYRLLSSSS SDSASSSRPS KTRGHPKKDH SKWVICKVYE RNCDDEDDGT ELSCLDEVFL  180
SLDDLDEISL PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-38116612170NO APICAL MERISTEM PROTEIN
1ut4_B2e-38116612170NO APICAL MERISTEM PROTEIN
1ut7_A2e-38116612170NO APICAL MERISTEM PROTEIN
1ut7_B2e-38116612170NO APICAL MERISTEM PROTEIN
3swm_A2e-38116615173NAC domain-containing protein 19
3swm_B2e-38116615173NAC domain-containing protein 19
3swm_C2e-38116615173NAC domain-containing protein 19
3swm_D2e-38116615173NAC domain-containing protein 19
3swp_A2e-38116615173NAC domain-containing protein 19
3swp_B2e-38116615173NAC domain-containing protein 19
3swp_C2e-38116615173NAC domain-containing protein 19
3swp_D2e-38116615173NAC domain-containing protein 19
4dul_A2e-38116612170NAC domain-containing protein 19
4dul_B2e-38116612170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752981e-152KC775298.1 Jatropha curcas NAC transcription factor 020 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090474.11e-123NAC domain-containing protein 104
SwissprotQ8GWK61e-81NC104_ARATH; NAC domain-containing protein 104
TrEMBLR4NEQ61e-122R4NEQ6_JATCU; NAC transcription factor 020
STRINGXP_002528415.11e-106(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-82xylem NAC domain 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]
  3. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  4. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]