PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02502.30
Common NameJCGZ_14572, LOC105643168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 361aa    MW: 41156.5 Da    PI: 6.2091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02502.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033426123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C ksFs+   L  H+r+H
  Jcr4S02502.30  4 HRCKLCLKSFSNGRALGGHMRSH 26
                   79********************9 PP

2zf-C2H213.30.00024232254123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k+F++   L  H  +H
  Jcr4S02502.30 232 YKCETCKKVFKSYQALGGHRASH 254
                    9************9999998887 PP

3zf-C2H212.70.00038285307123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp+C ++Fs+   L  H r+H
  Jcr4S02502.30 285 HECPYCFRVFSSGQALGGHKRSH 307
                    79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-8327IPR007087Zinc finger, C2H2
SuperFamilySSF576676.58E-5330No hitNo description
SMARTSM003550.035426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.023232254IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-11232256IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388232259IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-7232307No hitNo description
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
PfamPF139124.8E-11284307IPR007087Zinc finger, C2H2
SMARTSM003550.17285307IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286285307IPR007087Zinc finger, C2H2
PROSITE patternPS000280287307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MERHRCKLCL KSFSNGRALG GHMRSHMLNL PIPPKPEEDP TIQLSEETES ASSSSSSSEE  60
EGEAEGDDKG VYYGLRENPK RSIRLVDPEF SFAVDATSVV LQDRESETES SKNPTRRRSK  120
RTRSLLEHQY HHHQQRQQEQ ENNFKKLIFS KLSKTESWAE PEPVSSISDT TAEEDVAFCL  180
MMLSRDKWKR REQLLQNNRE QEEEEAEAEK SIEETDESDE FKSCKTRNRG KYKCETCKKV  240
FKSYQALGGH RASHKKLKNY TQNRETELET ENAGTSTSAV EKKVHECPYC FRVFSSGQAL  300
GGHKRSHVTG LGTTPARSST KVEDNLNLID LNLPAPIEDD DISQIELSAV SDAEFVNHIK  360
R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1938833e-40KJ193883.1 Corylus avellana microsatellite BR245 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083630.10.0zinc finger protein ZAT4
TrEMBLA0A067JXW60.0A0A067JXW6_JATCU; Uncharacterized protein
STRINGcassava4.1_031439m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-60C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]