PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02353.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 199aa    MW: 22373.1 Da    PI: 8.9829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02353.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-1673121153
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                    + y+GVr+++ +g++ AeIrd +     r  r++lg++ taeeAa+a+ + ++++
  Jcr4S02353.30  73 CSYRGVRRRP-WGKYSAEIRDpF-----RkVRVWLGTYTTAEEAAAAYRKKKEEF 121
                    67********.**********76.....45******************9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.4E-362193IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.26E-1373102No hitNo description
PfamPF008471.8E-973120IPR001471AP2/ERF domain
SMARTSM003801.1E-1774137IPR001471AP2/ERF domain
PROSITE profilePS5103219.09874136IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1674124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-2174126IPR001471AP2/ERF domain
PRINTSPR003671.6E-107586IPR001471AP2/ERF domain
PRINTSPR003671.6E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MIATRKVRII CHDPDATDSS SDEDEAHINP IGAKRFVKEI NLSMLPNESR SENCPGETSN  60
GDKFKTKTRI SSCSYRGVRR RPWGKYSAEI RDPFRKVRVW LGTYTTAEEA AAAYRKKKEE  120
FDSKTAKNKL KNLSIPSKID AVEESSDFFS HPSPSSVLDV STTTTSLVHG LESSSNVEDK  180
FSRVTDFRFM GRACAFPFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092999.11e-129ethylene-responsive transcription factor ERF118
TrEMBLA0A067JBK71e-128A0A067JBK7_JATCU; Uncharacterized protein
STRINGcassava4.1_023899m7e-58(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-12ethylene response factor 110