PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02219.50
Common NameJCGZ_13480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 183aa    MW: 20489.4 Da    PI: 10.9263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02219.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.9e-144390255
            AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y GVr+++ + +++AeIrdp   + k +r +lg+f+    Aaka+++a+ k+ g
  Jcr4S02219.50 43 HYGGVRQRP-WSKYAAEIRDP---NrKGRRLWLGTFDE---AAKAYDQAAFKFCG 90
                   699******.**********9...6566******9999...*********99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-254298IPR001471AP2/ERF domain
PfamPF008473.1E-94390IPR001471AP2/ERF domain
PROSITE profilePS5103217.8594398IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-174399IPR016177DNA-binding domain
CDDcd000181.84E-214397No hitNo description
SMARTSM003802.6E-2643104IPR001471AP2/ERF domain
PRINTSPR003674.5E-94455IPR001471AP2/ERF domain
PRINTSPR003674.5E-980100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MHSLASPIMQ PLALPASLTQ SSRSFLQPVQ ADSGAFAVEK KRHYGGVRQR PWSKYAAEIR  60
DPNRKGRRLW LGTFDEAAKA YDQAAFKFCG SKAILNFTLK ARKWNTRSSE ASEQKGTGES  120
EIVEEEAKKA VRERSLREMW RCRRRAGRLS WTGRVALGLG ILGEKKLGAQ NGEYGRFDTL  180
GLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2140100265ATERF1
3gcc_A4e-2140100265ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070058.12e-49ethylene-responsive transcription factor 5
SwissprotO803412e-28EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A067LNH91e-131A0A067LNH9_JATCU; Uncharacterized protein
STRINGcassava4.1_032473m3e-34(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-31ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]