PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02129.30
Common NameJCGZ_04860, LOC105634212
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 317aa    MW: 36291.6 Da    PI: 9.4737
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02129.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.21.2e-1949137286
       trihelix   2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt qe+l+Li+a++ ++er ++      +k  + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++  s+ s ++p +  +e
  Jcr4S02129.30  49 WTIQETLTLITAKKLDDERRSKptvpstSKPGELRWKWVENYCWAHGCYRSQNQCNDKWDNLLRDYKKVREYQSR--SDGSDSFPSYWTME 137
                    **************88888885333333678899****************************************8..57777899999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-539113IPR009057Homeodomain-like
PROSITE profilePS500907.30641111IPR017877Myb-like domain
PfamPF138375.0E-1648138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSQPPTSIPP PPQPQPQPQP PSHLPLLPFS ATTTTTPTSS NREYRKGNWT IQETLTLITA  60
KKLDDERRSK PTVPSTSKPG ELRWKWVENY CWAHGCYRSQ NQCNDKWDNL LRDYKKVREY  120
QSRSDGSDSF PSYWTMERHQ RKYYNLPSNM SLEVFEALNQ VVQRRYTNIT QQNVVVSPQQ  180
QQQQQVTVVA DVPVSPVTLR EVVPEALMDR PALSEGSESS ATESSDKHDS GGSKRRRMKN  240
NNIGASIKHS ASILAQTIRN CEEKKEKRHQ ELMEFEQRRL QLEETRNEVN RQGMANLAMA  300
VTNLSSAIQS LISGHQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072429.10.0uncharacterized protein LOC105634212
TrEMBLA0A067KQ450.0A0A067KQ45_JATCU; Uncharacterized protein
STRINGcassava4.1_022367m1e-149(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-46Trihelix family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]