PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02103.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 256aa    MW: 30108.8 Da    PI: 7.5635
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02103.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.32.7e-2031981586
       trihelix 15 remeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    e+e+++  +k++k+lWe vs+kmrerg++r+p qCk+kw+nl +ryk  ++++ ++      +cp+f++l+
  Jcr4S02103.20 31 GELEKDFTIAKRNKALWEIVSAKMRERGYRRTPDQCKCKWKNLVNRYKGKETSDPEN----GLHCPFFKELH 98
                   688999*******************************************99999974....457******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.66E-192081No hitNo description
PfamPF138379.7E-183499No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MHIPSGRGGL TAATATVDGT RDEGLDLGFE GELEKDFTIA KRNKALWEIV SAKMRERGYR  60
RTPDQCKCKW KNLVNRYKGK ETSDPENGLH CPFFKELHTV FNERAKNMQR LLFESEAGST  120
QAKKRAKRMS VDRSLNELSE DEDEDENGSG GEERLARTNS RKRKGERILT DMSSRVTITS  180
NPDIGSIHEM LKEFFQWQQQ MELQWREMME RRAHEQQLFE QEWRQSMEKI ERERLMIEQA  240
FRVEGRTEAD KRREQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070490.11e-150PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A067KU781e-150A0A067KU78_JATCU; Uncharacterized protein
STRINGGLYMA01G35370.22e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.13e-23Trihelix family protein