PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01542.20
Common NameJCGZ_07105, LOC105637574
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 689aa    MW: 75727 Da    PI: 6.2374
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01542.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like781.2e-24195255155
        G2-like   1 kprlrWtpeLHerFveaveqLG.....Gse.kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+ eLH++Fv av+qLG     G + +A+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Jcr4S01542.20 195 KPRVVWSVELHRKFVAAVNQLGidiflGVDaEAVPKKILDLMNVEKLTRENVASHLQKYRL 255
                    79******************976666655438****************************8 PP

2Response_reg78.32.6e-26201281109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl vdD+p+ + ll+++l++ +y +v+++ ++ +alell++++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + ++ Ga
  Jcr4S01542.20  20 VLAVDDDPTCLLLLETLLRRCQY-HVTVTNQAVSALELLRANKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGISHGA 113
                    799********************.***************777777*******************87754.558*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+ +eel +
  Jcr4S01542.20 114 CDYLLKPVRMEELKN 128
                    ************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1591680IPR017053Response regulator B-type, plant
SuperFamilySSF521722.42E-3617145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.4E-4217158No hitNo description
SMARTSM004487.1E-3318130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.35619134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.12E-2421134No hitNo description
Gene3DG3DSA:1.10.10.604.4E-27192260IPR009057Homeodomain-like
SuperFamilySSF466891.13E-16192259IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-21195255IPR006447Myb domain, plants
PfamPF002496.0E-6197254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MTVEQGIGEA KDQFPIGMRV LAVDDDPTCL LLLETLLRRC QYHVTVTNQA VSALELLRAN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DPKLVMKGIS HGACDYLLKP  120
VRMEELKNIW QHVIRRKFDN KDRNNFDNQD RTQYGNGEAT TDQKINKKRK DQNEDEDDDR  180
DENGHENEDP TTQKKPRVVW SVELHRKFVA AVNQLGIDIF LGVDAEAVPK KILDLMNVEK  240
LTRENVASHL QKYRLYLKRI STVANQQANM VAALGSTDAS YLQIGSANGL GFHNLAGTGQ  300
FHNATFRSLP PSGMLGRLNS SAALGMRGLP SPGVIQLGHL QTTGHLNNSQ GHFQPIGHAG  360
NDGTVLQGMP MALELDQIQA NKGVAYIREL PTDINNTGAF SVSNGFPDTK TMAGSSNNPF  420
LGVSNKPLML EGNAQGAQDV QKFVKQTSLS VTSLDSGIST HFPDNRTCND SWSNAVQSTG  480
VQSNSFSLND CFKQSTLHPN NIRDRMSTTA LQSANNPDVS SISTLPIDLH DSKLDLQCQV  540
TSIRNNSGQI INNAPQGWDD QRQDATFQTN AVCSSVNSGV PIPGVAIPMG QNFDPNNAIF  600
HRTTSFNSER QSNFIDSSLM KHNEVENLAM ETLIRSNEGY GVGQQKPQGS YVSNNFGSLE  660
DLASVMVKQL NCSMKESAIC LCSRNKPTW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24191261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076456.10.0two-component response regulator ARR12 isoform X1
SwissprotA2X1N21e-138ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A067KNZ80.0A0A067KNZ8_JATCU; Two-component response regulator
STRINGXP_002515447.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-122response regulator 12
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]