PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01486.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 251aa    MW: 27573.4 Da    PI: 9.77
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01486.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.4e-314107199
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q++
  Jcr4S01486.20   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAA 99 
                    6*********************************************************************************************** PP

         DUF260  92 aelallke 99 
                    +e++l ++
  Jcr4S01486.20 100 VEAVLKGT 107
                    *9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381558.1E-901245IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0023109IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGTPIT PINSEAAANG  120
HGPPLKAYDI RHVSKDENSA ASNDLNRVKT RNRVRRVVKS KGSNNNNKPI VEPSARDELT  180
RSTSHESSVS HQSELAMVEG ESKETESMVS VETAEASMLL RAEPESVIKA TRKRRSTATI  240
TQVLEIARTW T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235TRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077976.11e-170LOB domain-containing protein 40
SwissprotQ9M8861e-98LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A067KMA81e-169A0A067KMA8_JATCU; Uncharacterized protein
STRINGcassava4.1_012667m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-90LOB domain-containing protein 41