PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01363.30
Common NameJCGZ_18327, LOC105642028
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 243aa    MW: 26825.3 Da    PI: 6.2671
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01363.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.8e-304107199
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++  +q++
  Jcr4S01363.30   4 SCNGCRVLRKGCSDDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLINLIDAGPQHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNWAQCQAA 99 
                    6*********************************************************************************************** PP

         DUF260  92 aelallke 99 
                    ++++l+++
  Jcr4S01363.30 100 VDAVLRGT 107
                    99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1813109IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCT IRPCLQWIKS PDSQANATLF LAKFYGRAGL INLIDAGPQH  60
LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GNWAQCQAAV DAVLRGTPIM QMPSAPDAPP  120
PHLIDPFKTY DIRHVSKDSS SVELNKVKNR TRFKRPINKP TSPSESIGRV NLGDLSFEQF  180
REPWSSQMAN GDSSKDDESM FSIETVEDVN RDREPNQNLN NSGSDDGDEV AGLELTLGLV  240
PVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082091.10.0LOB domain-containing protein 42
SwissprotQ9CA302e-84LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A067JZK21e-180A0A067JZK2_JATCU; Uncharacterized protein
STRINGcassava4.1_014940m1e-145(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.17e-87LOB domain-containing protein 42
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]