PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01359.50
Common NameJCGZ_15970, LOC105630792
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30034 Da    PI: 7.9165
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01359.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-19121175256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ ++tk+q  +Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Jcr4S01359.50 121 RKKLRLTKQQSAILEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTK 175
                    78889************************************************98 PP

2HD-ZIP_I/II123.51e-39121209190
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                    +kk+rl+k+q+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +eL+ +
  Jcr4S01359.50 121 RKKLRLTKQQSAILEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELK-S 209
                    69*************************************************************************************9.4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.346117177IPR001356Homeobox domain
SMARTSM003895.7E-17119181IPR001356Homeobox domain
SuperFamilySSF466891.07E-18119185IPR009057Homeodomain-like
CDDcd000863.61E-16120178No hitNo description
Gene3DG3DSA:1.10.10.601.8E-18121175IPR009057Homeodomain-like
PfamPF000465.0E-17121175IPR001356Homeobox domain
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PfamPF021834.9E-9177210IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.6E-22177220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGFGISDHSV CNTGLGLGLI SCCHDKQEKN CSQSDHLHQE KKKKISLKYD HMFPSLTLGP  60
PFEAYTKIEA DLQPQASSPS AVSSFSNSSV KKEREFGGGE EVEVERVSSR ISDEDEEGSP  120
RKKLRLTKQQ SAILEDSFKE HSTLNPKQKQ ALAEQLNLRP RQVEVWFQNR RARTKLKQTE  180
VDCELLKKCC ETLTEENKRL QKELQELKSL KLTAPLYMQL PAATLTMCPS CERIGSGGDG  240
GGSSSTSTLT VGPKPPHFYT TASFTHPSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169177RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068141.10.0homeobox-leucine zipper protein HAT22
SwissprotP466046e-81HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A067L2U60.0A0A067L2U6_JATCU; Uncharacterized protein
STRINGcassava4.1_014073m1e-135(Manihot esculenta)
STRINGcassava4.1_026976m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-58HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]