PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01156.80
Common NameJCGZ_02116, LOC105631930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YC
Protein Properties Length: 260aa    MW: 29081.8 Da    PI: 6.2404
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01156.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.4e-56821851101
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql+sfw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflv
  Jcr4S01156.80  82 QLQSFWTNQyqeIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 177
                    89******99999*********************************************************************************** PP

          NF-YC  94 divprdel 101
                    divpr++l
  Jcr4S01156.80 178 DIVPREDL 185
                    *****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.86E-3376176IPR009072Histone-fold
PfamPF008081.6E-21104167IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37105182IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDQQGQGQGQ GHGQPSVAGR NTAPVPYGIS PYQSNKMMGP PAGSIQSATQ PTGVAASQSQ  60
LAEHQLVYQH IHQQQQQQLQ QQLQSFWTNQ YQEIEQTADF KNHSLPLARI KKIMKADEDV  120
RMISAEAPVI FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV  180
PREDLKDEVL PSVTRGSLPV GGPADAMPYY YMSPQLAPQV PVPGMPMGKP MMDQNFYSPQ  240
SRPYVGQPIW PQQQQPPADS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-41681824119HapE
4g92_C2e-41681824119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069546.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_012069547.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B21e-84NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A067KYR90.0A0A067KYR9_JATCU; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-76nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]