PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00963.50
Common NameJCGZ_03406, LOC105632271
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 329aa    MW: 36638.1 Da    PI: 7.1302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00963.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012426123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   +kC+ C+++F +   L  H++ H
  Jcr4S00963.50  4 HKCKLCTRTFANGRALGGHMKAH 26
                   79******************998 PP

2zf-C2H219.23.4e-06224245223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C++C+k+F+++  L+ H r +
  Jcr4S00963.50 224 RCEKCSKVFRSSQALVAHKRIC 245
                    8******************987 PP

3zf-C2H212.10.00062263285123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp+C k+F +   L  H r+H
  Jcr4S00963.50 263 FECPYCFKVFGSGQALGGHKRSH 285
                    89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-6327IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45431IPR007087Zinc finger, C2H2
SMARTSM003550.056426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.102.6E-4205274IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS501579.265223261IPR007087Zinc finger, C2H2
SMARTSM0035514223243IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.95E-7224285No hitNo description
PfamPF139125.5E-4224243IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681263285IPR007087Zinc finger, C2H2
PfamPF139123.3E-11263285IPR007087Zinc finger, C2H2
SMARTSM003550.15263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MERHKCKLCT RTFANGRALG GHMKAHLATL PLPPKTMSIQ QQPGNRTESA SSSYSSSGEE  60
QEIKNTEVEE KALVYGLREN PKKSFRFADP EFSFAIDAGS VVQDRESETE SRNPTRRRSK  120
RTRKSGFAEN QKLNFDFKKL KLKNPSLLES TSPSPSPSQS PSPSPAEPEP VSSVSDTSPE  180
EDVAMCLMML SRDVWLPNNE ELEQEQEEQE QEEIKANKIR GKLRCEKCSK VFRSSQALVA  240
HKRICSLNAT ELKKNHDGNE RIFECPYCFK VFGSGQALGG HKRSHLMGTS TTITALAENS  300
AKLEKSNSLI DLNLPAPVEE DDFSVVSDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115140RRRSKRTRKSGFAENQKLNFDFKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069986.10.0zinc finger protein ZAT4
TrEMBLA0A067L5V00.0A0A067L5V0_JATCU; Uncharacterized protein
STRINGcassava4.1_034175m1e-166(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-32C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]