PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00937.130
Common NameJCGZ_10019
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 402aa    MW: 46533.4 Da    PI: 9.3413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00937.130genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1623109597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     l+ ++ lk + l +p kf++++g +   s   tl+ ++gr W v+l  +kk+g+ ++ +GW eFv+   ++ g f+vFk+ g+s+f  +  +f
  Jcr4S00937.130  23 LMVASILKDKKLKIPEKFVKKYGDE--LSSIATLTVPNGRIWLVEL--EKKDGKLWFHNGWHEFVEYYSVRLGYFLVFKYGGDSNF--NTYIF 109
                     44566778888***********865..7779***************..********************************999999..66666 PP

2B360.82.2e-19296388198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f  +l ps+v +  +l +p++fa+++  ++ +   ++l+ ++g++W v++    + g+  l kGW eFv +ngL+egD++vF+l+++++  l+v+
  Jcr4S00937.130 296 FRVILRPSYVYRGFLLHIPNDFAQKYLVVT-R--YIKLQVSKGKEWPVRC--VCGHGKAKLCKGWTEFVWENGLEEGDVCVFELVNTMDILLKVT 385
                     667899********************6553.3..6***************..55555667999**********************9999999999 PP

                     EE- CS
              B3  96 vfr 98 
                     +fr
  Jcr4S00937.130 386 IFR 388
                     998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-2218111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2118110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-1819110No hitNo description
PROSITE profilePS5086313.40819112IPR003340B3 DNA binding domain
SMARTSM010191.6E-1520112IPR003340B3 DNA binding domain
PfamPF023621.3E-1323109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-24288388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-24290392IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-21294388No hitNo description
PROSITE profilePS5086313.874296390IPR003340B3 DNA binding domain
SMARTSM010194.8E-14296390IPR003340B3 DNA binding domain
PfamPF023621.0E-17296388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSRLDGPEGP DSPAKGSCMF YKLMVASILK DKKLKIPEKF VKKYGDELSS IATLTVPNGR  60
IWLVELEKKD GKLWFHNGWH EFVEYYSVRL GYFLVFKYGG DSNFNTYIFD LTVSEIRYPC  120
NLPSSLQEKF QDNQNIAEKK HLTNDRLMEI LGSGSTSHSP GSNYLGKYGH CTWTPSGNYE  180
VSREGLIQRK DAYDVVEKFH SYRDIGVQFN ESELTSTADK FGLSFMGEAD GRTRKRRQIT  240
DPNKYEPKIK QKAYENSRRL KITSESLTRR WRPVTPEEKQ RTISTADMFK PNNPFFRVIL  300
RPSYVYRGFL LHIPNDFAQK YLVVTRYIKL QVSKGKEWPV RCVCGHGKAK LCKGWTEFVW  360
ENGLEEGDVC VFELVNTMDI LLKVTIFRVL EDVIPVNQLP MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-4326539318146B3 domain-containing transcription factor VRN1
4i1k_B3e-4326539318146B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237TRKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF5021084e-46JF502108.1 Jatropha curcas clone Jcuint064 SSR sequence.
GenBankJF5021504e-46JF502150.1 Jatropha curcas clone Jcuint221 SSR sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534099.10.0B3 domain-containing transcription factor VRN1
RefseqXP_020534102.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067LNX80.0A0A067LNX8_JATCU; Uncharacterized protein
STRINGcassava4.1_033218m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-76B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]