PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00401.40
Common NameJCGZ_14339, LOC105642933
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 368aa    MW: 40430.5 Da    PI: 7.1464
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00401.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.6e-1082143147
                      TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a ++   +                +Wk+I + +g  +t  q++s+ qky
    Jcr4S00401.40  82 RESWTEQEHDKFLEALQLENWEmemmgseeifafvfdrDWKKIEAFVG-SKTVIQIRSHAQKY 143
                      789*************988777889999********************.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.46E-1276149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-580149IPR009057Homeodomain-like
SMARTSM007175.4E-481146IPR001005SANT/Myb domain
PfamPF002492.1E-782143IPR001005SANT/Myb domain
CDDcd001671.73E-584144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVSVNPNPAQ GFYFFDPMSM GLPGLNSLPP QMNSTASTTA TNNTTAAGNT ATSTTSAAAN  60
TVAFADDPNK KIRKPYTITK SRESWTEQEH DKFLEALQLE NWEMEMMGSE EIFAFVFDRD  120
WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN GTSEHVPPPR PKRKAAHPYP QKAPKNVAPV  180
VTQVTGPFQP SPASLEPRYV YGSDPPSVLG NPMTGGPLTS WNFNSMAPVN ASGATKDEVG  240
LAAPANNCCY SSSNESTPRT GRTSEIIDRG DQGKAVRVMP DFAQVYSFIG SVFDPNASGH  300
LQKMKQMDPI NLETVLLLMR NLSINLTSPE FEDHRRLLAS YDIDTEKAKS VGPFVDMDTD  360
RTPKEVRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932342e-41BT093234.1 Soybean clone JCVI-FLGm-17C23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083312.10.0protein REVEILLE 3 isoform X1
SwissprotC0SVG51e-106RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A067K0G70.0A0A067K0G7_JATCU; Uncharacterized protein
STRINGcassava4.1_010350m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.16e-92MYB_related family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]