PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00242.50
Common NameJCGZ_21870, LOC105649932
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 354aa    MW: 40439 Da    PI: 4.7488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00242.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36441362103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k++e+++d++++ ++sws++g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgFkk++ ++         weF+++ F +g+k+ll++i
  Jcr4S00242.50  44 FLTKTFEMVDDPNTNYVVSWSAEGTSFVVWDPHSFSTSLLPRYFKHNNFSSFVRQLNTYGFKKIDPDR---------WEFANEGFLRGHKQLLKTI 130
                    9****************************************************************999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    kr+k++
  Jcr4S00242.50 131 KRRKTT 136
                    ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.72E-3540133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNPYFVVKEE YLGASSSQSG DERVPMALPP QPMEGLHDTG PPPFLTKTFE MVDDPNTNYV  60
VSWSAEGTSF VVWDPHSFST SLLPRYFKHN NFSSFVRQLN TYGFKKIDPD RWEFANEGFL  120
RGHKQLLKTI KRRKTTAPPL TQQQALGACV EVGRFGLDRE IDQLKRDRQH LMMELVRLRH  180
QQQNTRAYIQ AMEQRLQGTE IKQQQMMQFL ARAVRNPAFL QQLTQQKDKR KELEEAITKK  240
RRRPIELGQR SNGDSSHGDG SQCNINTIKT EPQESADYGI GVSELEALAL EMQGYSRARR  300
GEEEEGEEEA EPPESGDREL DDGFWDELLS EGNGEGEEEE GVDVLAERLG EIGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D5e-26191355131Heat shock factor protein 1
5d5v_B5e-26191355131Heat shock factor protein 1
5d5u_B5e-26191355131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKTIKRR
2228242KRKELEEAITKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092162.10.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_012092161.10.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_012092160.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A067JPD10.0A0A067JPD1_JATCU; Uncharacterized protein
STRINGPOPTR_0002s04900.11e-163(Populus trichocarpa)
STRINGPOPTR_0005s23640.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-112heat shock transcription factor A6B
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]