PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00135.160
Common NameJCGZ_23512, WRKY40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 320aa    MW: 36146.2 Da    PI: 9.783
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00135.160genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.3e-31253310359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  Jcr4S00135.160 253 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDSSMLIVTYEGEHNHS 310
                     9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-18204249IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.4E-34239310IPR003657WRKY domain
PROSITE profilePS5081129.666246312IPR003657WRKY domain
SuperFamilySSF1182905.89E-27249310IPR003657WRKY domain
SMARTSM007744.9E-38251311IPR003657WRKY domain
PfamPF031067.5E-27253309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEEIEEANKA AIESCHRVID LLCTSLGHGR VRKLNKFRSS LPQNIFLDSP NCKTILAPKP  60
LQMVPANFLE TPLPEIDSKT TSCLHPSKKM FLENPVLEMN SNVRPPLQIA QIKPSQQYQF  120
LQQQQQIQRM QFQQQQQMKY QADMIYSRSN SGINLKFDGS TCTPTVSSTR SFISSLSMDG  180
NFDGDSFHLI GVPQSSDQIS QQTRRRCSGR GEDGSVKCGS TGKCHCSKRR KLRVKRSIKV  240
PAISNKVADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSL RGCPARKHVE RCLEDSSMLI  300
VTYEGEHNHS RLLSSQSAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-202493091271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852920.0KC485292.1 Jatropha curcas WRKY transcription factor 40 (WRKY40) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020540475.10.0probable WRKY transcription factor 39
SwissprotQ9SR071e-117WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLS5CKG90.0S5CKG9_JATCU; WRKY transcription factor 40
STRINGPOPTR_0013s03990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-110WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]