PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00057.310
Common NameJCGZ_14516
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 194aa    MW: 21348.3 Da    PI: 8.6723
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00057.310genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.51.7e-368101193
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                     +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq e +  +
  Jcr4S00057.310   8 PCGACKFLRRKCLKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVGHLFALQQQAELAYIQ 101
                     7***********************9989**********************************************************98866444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.1197109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-358100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSSNGGGPCG ACKFLRRKCL KGCIFAPYFD SDQGTAHFAA VHKVFGASNA SKLLLRIPAH  60
KRLDAVVTLC YEALARVRDP VYGCVGHLFA LQQQAELAYI QARLSTLQHL PLPHQSPSQT  120
TSTMASNSNM SMNYDQQQVL QSQYLSTELA SICNKNPLDP ELQADDLQSL ARDFVSKYLP  180
GVRFKPPSSH QSNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083562.11e-141PREDICTED: LOB domain-containing protein 19
SwissprotO813223e-67LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A067K9131e-143A0A067K913_JATCU; Uncharacterized protein
STRINGVIT_15s0048g00840.t012e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-64LOB domain-containing protein 31
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]