PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00053.270
Common NameJHL18I08.6, LOC105633866
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 238aa    MW: 26245.2 Da    PI: 5.9435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00053.270genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-194291255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Jcr4S00053.270 42 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 91
                    69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.05E-2241101No hitNo description
SMARTSM003805.3E-3742105IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-214299IPR016177DNA-binding domain
PfamPF008473.1E-144291IPR001471AP2/ERF domain
PROSITE profilePS5103222.4314299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3042100IPR001471AP2/ERF domain
PRINTSPR003676.9E-104354IPR001471AP2/ERF domain
PRINTSPR003676.9E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSKSIMTNST IPEKKQLRKP AQASSRKGCM RGKGGPENAL CTYKGVRQRT WGKWVAEIRE  60
PNRGARLWLG TFDTSHEAAM AYDAAARKLY GPEAKLNLPE LHPNNNSRFP VETHSAQIQM  120
GNQSQGQHNS STMSSSPSSS SGSPIIRTND VTPAYTHESS NTESNGTVVE EEANLWQNQQ  180
GIDDLWGNLN VNLPLFDDSI WAEAAMSIDF PAMEDTGIFA SNLMDVTGWD ALHTPWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-174399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119660.0AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071953.11e-180dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ24e-56DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLE6NU621e-178E6NU62_JATCU; JHL18I08.6 protein
STRINGcassava4.1_029526m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]