PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00021.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 265aa    MW: 30381.2 Da    PI: 9.8128
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00021.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.4e-36101022103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    F++k+y+i++d++++++isw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i
  Jcr4S00021.40  10 FVMKTYQIVNDPKTDTIISWGKANNSFIVIDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLRGQKQLLKNI 96 
                    9****************************************************************999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                     r+k++
  Jcr4S00021.40  97 VRRKHS 102
                    **9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-55699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-38799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MESNNVVAPF VMKTYQIVND PKTDTIISWG KANNSFIVID PLDFSQRILP AYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWEF ANECFLRGQK QLLKNIVRRK HSKSSFMQGK IEDFDNEELV  120
MEIARLKQEQ KLLEKELEGM NKRLEATERR PQQMMAFLNK VVEDPDLLPR MMLQKERTRQ  180
LTEKKRRTYD LLLLRRPLVE PPFLVLLIGA GIGNSVTVAV SPPGNGLIVY GGDRVGEISY  240
FAGLEAGVDA RPPPPYPFSL LGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-28710417125Heat shock factor protein 1
5d5u_B6e-2879926129Heat shock factor protein 1
5d5v_B6e-2879926129Heat shock factor protein 1
5d5v_D6e-2879926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076680.11e-133heat stress transcription factor C-1
SwissprotQ9LV521e-91HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A067KBY41e-131A0A067KBY4_JATCU; Uncharacterized protein
STRINGcassava4.1_010201m1e-118(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-87heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]