PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00005.370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YA
Protein Properties Length: 249aa    MW: 27442.4 Da    PI: 10.4455
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00005.370genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA86.73.3e-2775155158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk........................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq+Rakle+++k                        l  ++ +pylheSRh hAl+R RgsgGrF
  Jcr4S00005.370  75 DGPIYVNAKQYHGILRRRQSRAKLEAQNKlvksrkmiigrvvlifmhqlpitkL-LHGLQPYLHESRHLHALNRVRGSGGRF 155
                     57************************************************9975.7999**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.8E-2773158IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.87374158IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-2677155IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607999IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MKPVFLFSTP EIALNPSQVD NCYSMARAPF PHADNYFGGL FTPYGPQTII QPQLGSQMVG  60
MTSARVPLPL DLADDGPIYV NAKQYHGILR RRQSRAKLEA QNKLVKSRKM IIGRVVLIFM  120
HQLPITKLLH GLQPYLHESR HLHALNRVRG SGGRFLSTKR SQQPDPTSTS CTHGVSDTIS  180
FHQKNEMSER EMCVSRAGQS GASNTTRSDI TSVSSSDLIF RQPDRRFSGM STHIGGGMQT  240
SGGLICSGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-1677168474NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077008.11e-160nuclear transcription factor Y subunit A-3
RefseqXP_012077009.11e-160nuclear transcription factor Y subunit A-3
RefseqXP_012077010.11e-160nuclear transcription factor Y subunit A-3
RefseqXP_020536550.11e-160nuclear transcription factor Y subunit A-3
RefseqXP_020536552.11e-160nuclear transcription factor Y subunit A-3
RefseqXP_020536553.11e-160nuclear transcription factor Y subunit A-3
TrEMBLA0A067KPY71e-160A0A067KPY7_JATCU; Uncharacterized protein
STRINGcassava4.1_011576m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.23e-43nuclear factor Y, subunit A3