PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc032249.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 178aa    MW: 19825.4 Da    PI: 9.8375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc032249.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1977127356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g+
  Itr_sc032249.1_g00001.1  77 YRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFRMRGA 127
                              9*******.***********9987..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.23E-2976135No hitNo description
SuperFamilySSF541712.35E-2376136IPR016177DNA-binding domain
PfamPF008475.8E-1476126IPR001471AP2/ERF domain
PROSITE profilePS5103224.57976134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3276135IPR001471AP2/ERF domain
SMARTSM003802.0E-3776140IPR001471AP2/ERF domain
PRINTSPR003678.2E-117788IPR001471AP2/ERF domain
PRINTSPR003678.2E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSDFALLESI RRQLLDDFDA PPVFCRRGSL GESGWLSSVD ETPTVAVEMG FYEFPVILDF  60
TAVPPPPPPP PAVKRNYRGV RRRPWGKFAA EIRDPAKNGA RVWLGTYETA EDAALAYDRA  120
AFRMRGARAL LNFPHRINSG EAEPVRITTN KRSASTDCSS SSSTTSENVS FKRWKKTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3872141170ATERF1
3gcc_A2e-3872141170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4050812e-33KC405081.1 Salvia miltiorrhiza ERF1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190741.12e-71PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803386e-45EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A484L2K03e-61A0A484L2K0_9ASTE; Uncharacterized protein
STRINGGLYMA11G03910.22e-46(Glycine max)
STRINGPGSC0003DMT4000675356e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-36ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]