PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004426.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 1310aa    MW: 145864 Da    PI: 9.1321
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004426.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.8e-342133732128
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 
                              a k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+p i+++tgt++++as+    a++s+s++++ 
  Itr_sc004426.1_g00005.1 213 ASKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETVQWLLQQAEPTIIAATGTGTIPASALavAAKASVSEQGT- 297
                              6799*****************************************************************8887544444444442. PP

                      TCP  86 ssg.........................................................kaaksaakskksqksaasalnlakes 114
                                +                                                         +                     a  s
  Itr_sc004426.1_g00005.1 298 --SvfaslhefagirshwavmgdannlsrpqissaaairshwataiadsgrsatagsilrS---------------------ASVS 360
                              ..22346667777888888888888888888888888875555555544444444444431.....................3333 PP

                      TCP 115 rakarararertre 128
                               +ka ++ r+rt+ 
  Itr_sc004426.1_g00005.1 361 ASKAAQH-RQRTAR 373
                              3332222.232222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525405.21E-561194IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF059703.1E-37103205IPR010285DNA helicase Pif1-like
PfamPF036342.8E-30218375IPR005333Transcription factor, TCP
PROSITE profilePS5136926.707219273IPR017887Transcription factor TCP subgroup
HamapMF_0321121.4474301289IPR033688RNA cytidine acetyltransferase NAT10
PfamPF083515.8E-31535629IPR013562tRNA(Met) cytidine acetyltransferase TmcA, N-terminal
PfamPF051276.2E-63710907IPR007807Helicase domain
PfamPF137182.3E-579471075IPR000182GNAT domain
PfamPF137259.9E-3811281264IPR027992Possible tRNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006281Biological ProcessDNA repair
GO:0016072Biological ProcessrRNA metabolic process
GO:0034470Biological ProcessncRNA processing
GO:0003678Molecular FunctionDNA helicase activity
GO:0005524Molecular FunctionATP binding
GO:0008080Molecular FunctionN-acetyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1310 aa     Download sequence    Send to blast
MPFGTFLSRM HRFNVDVSCK IQFALMELEN LLFSWGKSLK DFPEMPISDE SSMGLSENML  60
IAEELPYDKE SLKTEHETLV TQLTDEQRNV YDSVMNDIDS NGGGRTTHSR FAIPLSLNED  120
STCNISQGSD LAELIIRSKL IIWNEAPMTH KYCFEALDKT MRDILRFTIP GSAEKTFGGK  180
TLVLVGDFRQ ILPVIPKATR PETNNNNKKL QVASKRSSNK DRHKKVDGRG RRIRMPALCA  240
ARIFQLTREL GHKTDGETVQ WLLQQAEPTI IAATGTGTIP ASALAVAAKA SVSEQGTSVF  300
ASLHEFAGIR SHWAVMGDAN NLSRPQISSA AAIRSHWATA IADSGRSATA GSILRSASVS  360
ASKAAQHRQR TARQQVSSTP FSTSASASTA TTQSAASSSP VSRRNSMSFP IVNCLIAINY  420
IVTVSTTHKR RSSGLSATLP LTASRSQLTH STLLPRLRSL CPRQIVNLHY MVSKALVKSR  480
PTVLWCYKDK LELSSHKKKR KKQLKKLMQR GLLDPERADP FELFVETGGV SYCLYKDSER  540
VLGNTFGMCI LQDFEALTPN LLARTIETVE GGGLIVLLLR SLSSLTSLYT MVMDVHERFR  600
TESHSQTSGR FNERFLLSLA SCKACIVMDD ELNILPISSH MKSIKPVPVQ EDSEGLSEAE  660
RDLKNLKEQL NDDFPAGPLI RKCITLDQGK AVINFLDSIL DKTLRSTVAL LAARGRGKSA  720
ALGLAVAGAI AAGYSNIFVT APSPENLKTL FEFICKGFDM LEYKEHLDYD VVKSTNPEFK  780
KATVRINIYK HHRQTIQYIQ PHEHAKLSQV ELLVVDEAAA IPLPVVKSLL GPYLVFLSST  840
VNGYEGTGRS LSLKLLQQLE EQNHMPSKNA ESSLSGRLFK KIELNESIRY APGDPIESWL  900
NSLLCLDITN FTPSISRLPP PGECDLYYVN RDTLFSYHKE SELFLQRMMA LYVASHYKNS  960
PNDLQLMADA PAHHLFVLLG PVDESKNHLP DILCVVQVCL EGQISRESAM KSLSAGRQPF  1020
GDQIPWKFCQ QFNDSVFPSL SGARIVRIAT HPTAMKLGYG SAAVELLTRI NAMNEHQKKA  1080
TVTIWASIFF IYRGGFRGEH TPRTKEYRNA FEYMKLLRVK KDRWGGAVIM DCVTILAHLY  1140
FSEKLPVSLS YAQASVLLCI GLQDKDVSQI EGEMHLERQQ ILSLFIKTMK KFYKYLYDLA  1200
SKEIDSTVSR LEEMEPHAIS LDDDLNNAAK QVQEEMNAKM DGLLDPDLLQ GYAIVDREAD  1260
FENALQNGGK VHPGGVISVK SNRNKADKGY KGEKKRSKND LSKSSKKRKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5jpq_i0.0465106838658Kre33
5jpq_j0.0465106838658Kre33
5oql_i0.0465106838658RNA cytidine acetyltransferase
5oql_j0.0465106838658RNA cytidine acetyltransferase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1497501KKRKK
212931308KKRSKNDLSKSSKKRK
Functional Description ? help Back to Top
Source Description
UniProtRNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. {ECO:0000255|HAMAP-Rule:MF_03211}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155279.10.0PREDICTED: RNA cytidine acetyltransferase 1-like
SwissprotQ9XIK40.0NT101_ARATH; RNA cytidine acetyltransferase 1
TrEMBLA0A484MSB70.0A0A484MSB7_9ASTE; RNA cytidine acetyltransferase
STRINGXP_010249467.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-29TCP family protein
Publications ? help Back to Top
  1. Xu R,Zhang S,Huang J,Zheng C
    Genome-wide comparative in silico analysis of the RNA helicase gene family in Zea mays and Glycine max: a comparison with Arabidopsis and Oryza sativa.
    PLoS ONE, 2013. 8(11): p. e78982
    [PMID:24265739]