PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004198.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 156aa    MW: 17547.4 Da    PI: 7.6518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004198.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-201364256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f+taeeAa+a+++a+ +++g+
  Itr_sc004198.1_g00001.1 13 KYRGIRRRP-WGKYAAEIRDPNRNG--ARLWLGTFDTAEEAARAYDRAAYAFRGH 64
                             8********.**********96665..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-341377IPR001471AP2/ERF domain
PROSITE profilePS5103225.2381371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-321372IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-241372IPR016177DNA-binding domain
PfamPF008472.9E-141364IPR001471AP2/ERF domain
CDDcd000181.23E-181373No hitNo description
PRINTSPR003671.1E-111425IPR001471AP2/ERF domain
PRINTSPR003671.1E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MENEERVIRR ENKYRGIRRR PWGKYAAEIR DPNRNGARLW LGTFDTAEEA ARAYDRAAYA  60
FRGHQAILNF PNDGHYAGGN VVAAAAAPGP SSSTPPPPPP PSTSSVYVPS FSVSREDYYE  120
RVGDTSEDKI IEFEYLDNNL LEDLLGSQVN KRSKLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2912731374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610278.12e-56PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016485379.12e-56PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016567929.12e-56PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G2X6304e-56A0A2G2X630_CAPBA; Ethylene-responsive transcription factor
STRINGXP_009610278.19e-56(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]