PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003896.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 336aa    MW: 35216.2 Da    PI: 8.7809
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003896.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.74.9e-3969150383
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                              +kk +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++  ++s +  + 
  Itr_sc003896.1_g00002.1  69 VKKASSKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRGGGT 150
                              79******************************************************************88844444333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.3E-3673176IPR005333Transcription factor, TCP
PROSITE profilePS5136927.974128IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEFIEPHSSS RNNNGVSSSE HHRPAPPQAQ EAPPSSLQLV SSHQSQPDPP AGQSRAPTHP  60
LLSPPSKLVK KASSKDRHTK VEGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLHQ  120
AEPAIIAATG TGTIPANFST LNVSLRGGGT TVSAPPFIHG GATAATAAML GFHRHEAGSD  180
PKPAPSTFIP APAMWAVAAP AAGNAGNSFW MLPLSGGGTS GTPTSGCVAQ PEQHHLWQYK  240
ASGGGFEFPG GGGARFSPVQ LTPAQPVQQL GLGVSETNLG MLPSPAINAA AYTTKRVDLG  300
MTLEQHQHQH HGRHHNNQNH QPQGSDSGGE NPKDSE
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157694.11e-146PREDICTED: transcription factor TCP23-like isoform X2
SwissprotQ9C5182e-54TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1U7WCU11e-105A0A1U7WCU1_NICSY; transcription factor TCP23-like
STRINGXP_009775051.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-47TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]