PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003319.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 256aa    MW: 26594.1 Da    PI: 8.997
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003319.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.41.3e-3451123474
                      TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                              +    +++hTkv+gR+RRvR++a+caar+F+L++eLG+ + ++ti+WLl+qa+pai+++tgt++++as++  +
  Itr_sc003319.1_g00001.1  51 RNAAVKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRTEGETIQWLLRQAEPAIIAATGTGTTPASAVttT 123
                              566679********************************************************99999777432 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-2855120IPR005333Transcription factor, TCP
PROSITE profilePS5136926.95555109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGSENVFSGF SVSDSQSPNA LSPTSTPAQT PLYRLVGGAA AADNGEASRG RNAAVKDRHT  60
KVNGRGRRVR MPALCAARIF QLTRELGHRT EGETIQWLLR QAEPAIIAAT GTGTTPASAV  120
TTTPSGAVIA SGPPPSAMAP LAGMSRVLPL PIPSPSVVGA SRYVAAAAPT NRVHQLSVPC  180
LNNGGGRFMQ AAAAAAEMGL FSITRPCCRF DLIQPSSAAA QHDFSGNVPS FTSMLMQTSP  240
TMNEVEGEHY EDVGKH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156215.11e-133PREDICTED: transcription factor PCF2
TrEMBLA0A484MU794e-67A0A484MU79_9ASTE; Uncharacterized protein
STRINGSolyc09g008030.1.11e-40(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.11e-25TCP family protein